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Maftools: efficient and comprehensive analysis of somatic variants in cancer

Genome research, 2018-11, Vol.28 (11), p.1747-1756

2018

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Restless Multi-Armed Bandit in Opportunistic Scheduling

1st ed. 2021., 2021

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Large-scale genomic analyses reveal alterations and mechanisms underlying clonal evolution and immune evasion in esophageal cancer

Nature communications, 2023-02, Vol.14 (1), p.893-3, Article 893

Lin, De-Chen

2023

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Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics

Nature communications, 2023-11, Vol.14 (1), p.7017-7017, Article 7017

2023

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Integrated single-cell transcriptome analysis reveals heterogeneity of esophageal squamous cell carcinoma microenvironment

Nature communications, 2021-12, Vol.12 (1), p.7335-7335, Article 7335

2021

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Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression

Nature communications, 2018-09, Vol.9 (1), p.3619-13, Article 3619

2018

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Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas

Gut, 2018-10, Vol.67 (10), p.1769-1779

2018

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Master transcription factors form interconnected circuitry and orchestrate transcriptional networks in oesophageal adenocarcinoma

Gut, 2020-04, Vol.69 (4), p.630-640

2020

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Interplay and cooperation between SREBF1 and master transcription factors regulate lipid metabolism and tumor-promoting pathways in squamous cancer

Nature communications, 2021-07, Vol.12 (1), p.4362-4362, Article 4362

2021

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A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes

Nature communications, 2021-04, Vol.12 (1), p.2485-2485, Article 2485

2021

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A novel role of master regulator transcription factor in anti-tumor immunity and cancer immunotherapy

Theranostics, 2023-01, Vol.13 (6), p.1823-1825

2023

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Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation

Genome Biology, 2023-08, Vol.24 (1), p.193-193, Article 193

2023

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Comparative impact of grade on mortality across salivary cancers: A novel, unifying staging system

Head & neck, 2023-08, Vol.45 (8), p.2028-2039

2023

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Nodal staging convergence for HPV− and HPV+ oropharyngeal carcinoma

Cancer, 2021-05, Vol.127 (10), p.1590-1597

2021

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Disease-specific alteration of karyopherin-α subtype establishes feed-forward oncogenic signaling in head and neck squamous cell carcinoma

Oncogene, 2020-03, Vol.39 (10), p.2212-2223

2020

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Degalactotigonin, a Natural Compound from Solanum nigrum L ., Inhibits Growth and Metastasis of Osteosarcoma through GSK3β Inactivation-Mediated Repression of the Hedgehog/Gli1 Pathway

Clinical cancer research, 2018-01, Vol.24 (1), p.130-144

2018

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ARID1A and CEBPα cooperatively inhibit UCA1 transcription in breast cancer

Oncogene, 2018-11, Vol.37 (45), p.5939-5951

2018

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SLC52A3 expression is activated by NF-κB p65/Rel-B and serves as a prognostic biomarker in esophageal cancer

Cellular and molecular life sciences : CMLS, 2018-07, Vol.75 (14), p.2643-2661

2018

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SOX7 regulates MAPK/ERK-BIM mediated apoptosis in cancer cells

Oncogene, 2019-08, Vol.38 (34), p.6196-6210

2019

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Identification of a Novel SYK/c-MYC/MALAT1 Signaling Pathway and Its Potential Therapeutic Value in Ewing Sarcoma

Clinical cancer research, 2017-08, Vol.23 (15), p.4376-4387

2017

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SETDB1 accelerates tumourigenesis by regulating the WNT signalling pathway

The Journal of pathology, 2015-03, Vol.235 (4), p.559-570

2015

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The c‐MYC–BMI1 axis is essential for SETDB1‐mediated breast tumourigenesis

The Journal of pathology, 2018-09, Vol.246 (1), p.89-102

2018

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SEanalysis: a web tool for super-enhancer associated regulatory analysis

Nucleic acids research, 2019-07, Vol.47 (W1), p.W248-W255

2019

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Quantitative Nodal Burden and Mortality Across Solid Cancers

JNCI : Journal of the National Cancer Institute, 2022-07, Vol.114 (7), p.1003-1011

2022

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Reciprocal inhibition between TP63 and STAT1 regulates anti-tumor immune response through interferon-γ signaling in squamous cancer

Nature communications, 2024-03, Vol.15 (1), p.2484-2484, Article 2484

2024

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Maftools: efficient and comprehensive analysis of somatic variants in cancer

Restless Multi-Armed Bandit in Opportunistic Scheduling

Large-scale genomic analyses reveal alterations and mechanisms underlying clonal evolution and immune evasion in esophageal cancer

Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics

Integrated single-cell transcriptome analysis reveals heterogeneity of esophageal squamous cell carcinoma microenvironment

Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression

Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas

Master transcription factors form interconnected circuitry and orchestrate transcriptional networks in oesophageal adenocarcinoma

Interplay and cooperation between SREBF1 and master transcription factors regulate lipid metabolism and tumor-promoting pathways in squamous cancer

A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes

A novel role of master regulator transcription factor in anti-tumor immunity and cancer immunotherapy

Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation

Comparative impact of grade on mortality across salivary cancers: A novel, unifying staging system

Nodal staging convergence for HPV− and HPV+ oropharyngeal carcinoma

Disease-specific alteration of karyopherin-α subtype establishes feed-forward oncogenic signaling in head and neck squamous cell carcinoma

Degalactotigonin, a Natural Compound from Solanum nigrum L ., Inhibits Growth and Metastasis of Osteosarcoma through GSK3β Inactivation-Mediated Repression of the Hedgehog/Gli1 Pathway

ARID1A and CEBPα cooperatively inhibit UCA1 transcription in breast cancer

SLC52A3 expression is activated by NF-κB p65/Rel-B and serves as a prognostic biomarker in esophageal cancer

SOX7 regulates MAPK/ERK-BIM mediated apoptosis in cancer cells

Identification of a Novel SYK/c-MYC/MALAT1 Signaling Pathway and Its Potential Therapeutic Value in Ewing Sarcoma

SETDB1 accelerates tumourigenesis by regulating the WNT signalling pathway

The c‐MYC–BMI1 axis is essential for SETDB1‐mediated breast tumourigenesis

SEanalysis: a web tool for super-enhancer associated regulatory analysis

Quantitative Nodal Burden and Mortality Across Solid Cancers

Reciprocal inhibition between TP63 and STAT1 regulates anti-tumor immune response through interferon-γ signaling in squamous cancer

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