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Stripenn detects architectural stripes from chromatin conformation data using computer vision

Nature communications, 2022-03, Vol.13 (1), p.1602-14, Article 1602

2022

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Epigenetic scarring of exhausted T cells hinders memory differentiation upon eliminating chronic antigenic stimulation

Nature immunology, 2021-08, Vol.22 (8), p.1008-1019

2021

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TooManyCells identifies and visualizes relationships of single-cell clades

Nature methods, 2020-04, Vol.17 (4), p.405-413

2020

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TCF-1 mediates chromatin intermingling during T cell development

Nature immunology, 2022-07, Vol.23 (7), p.1000-1001

2022

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AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics

Nature communications, 2024-05, Vol.15 (1), p.3744-19, Article 3744

2024

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Author Correction: Epigenetic scarring of exhausted T cells hinders memory differentiation upon eliminating chronic antigenic stimulation

Nature immunology, 2021-11, Vol.22 (11), p.1465-1465

2021

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A mouse model of HIES reveals pro- and anti-inflammatory functions of STAT3

Blood, 2014-05, Vol.123 (19), p.2978-2987

2014

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Regulation of T-Cell Activation and Differentiation

Blood, 2016-12, Vol.128 (22), p.SCI-11-SCI-11

Vahedi, Golnaz

2016

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Validity and Reliability of the Iranian Version of the Short Form Social Well Being Scale in a General Urban Population

Iranian journal of public health, 2019-08, Vol.48 (8), p.1478-1487

2019

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Systems Approaches for Studying Immunity

The Journal of immunology (1950), 2023-04, Vol.210 (7), p.843-844

2023

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Transcriptional and Epigenetic Control of T Helper Cell Specification: Molecular Mechanisms Underlying Commitment and Plasticity

Annual review of immunology, 2012-01, Vol.30 (1), p.707-731

2012

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Response Comment on “Validity and Reliability of the Iranian Version of the Short Form Social Well Being Scale in a General Urban Population”

Iranian journal of public health, 2020-04, Vol.49 (4), p.820-821

2020

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TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors

Nature immunology, 2022-07, Vol.23 (7), p.1052-1062

2022

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An integrated method for mutation detection using on-chip sample preparation, single-stranded conformation polymorphism, and heteroduplex analysis

Electrophoresis, 2004-07, Vol.25 (14), p.2346-2356

2004

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BRD4 assists elongation of both coding and enhancer RNAs by interacting with acetylated histones

Nature structural & molecular biology, 2014-12, Vol.21 (12), p.1047-1057

2014

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Do Memory CD4 T Cells Keep Their Cell-Type Programming: Plasticity versus Fate Commitment? Epigenome: A Dynamic Vehicle for Transmitting and Recording Cytokine Signaling

Cold Spring Harbor perspectives in biology, 2018-03, Vol.10 (3), p.a028779

2018

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Joint profiling of chromatin accessibility and CAR-T integration site analysis at population and single-cell levels

Proceedings of the National Academy of Sciences - PNAS, 2020-03, Vol.117 (10), p.5442-5452

2020

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Multiscale 3D genome organization underlies ILC2 ontogenesis and allergic airway inflammation

Nature immunology, 2023-01, Vol.24 (1), p.42-54

2023

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Intrinsically disordered domain of transcription factor TCF-1 is required for T cell developmental fidelity

Nature immunology, 2023-10, Vol.24 (10), p.1698-1710

2023

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Type I IFN induces binding of STAT1 to Bcl6: divergent roles of STAT family transcription factors in the T follicular helper cell genetic program

The Journal of immunology (1950), 2014-03, Vol.192 (5), p.2156-2166

2014

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Long genes linked to autism spectrum disorders harbor broad enhancer-like chromatin domains

Genome research, 2018-07, Vol.28 (7), p.933-942

2018

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Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes

Nature metabolism, 2022-02, Vol.4 (2), p.284-299

2022

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Single-cell expression profiling of islets generated by the Human Pancreas Analysis Program

Nature metabolism, 2023-05, Vol.5 (5), p.713-715

2023

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Enhancing the understanding of asthma

Nature immunology, 2014-08, Vol.15 (8), p.701-703

2014

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Modeling type 1 diabetes progression using machine learning and single-cell transcriptomic measurements in human islets

Cell reports. Medicine, 2024-05, Vol.5 (5), p.101535, Article 101535

2024

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Stripenn detects architectural stripes from chromatin conformation data using computer vision

Epigenetic scarring of exhausted T cells hinders memory differentiation upon eliminating chronic antigenic stimulation

TooManyCells identifies and visualizes relationships of single-cell clades

TCF-1 mediates chromatin intermingling during T cell development

AnnoSpat annotates cell types and quantifies cellular arrangements from spatial proteomics

Author Correction: Epigenetic scarring of exhausted T cells hinders memory differentiation upon eliminating chronic antigenic stimulation

A mouse model of HIES reveals pro- and anti-inflammatory functions of STAT3

Regulation of T-Cell Activation and Differentiation

Validity and Reliability of the Iranian Version of the Short Form Social Well Being Scale in a General Urban Population

Systems Approaches for Studying Immunity

Transcriptional and Epigenetic Control of T Helper Cell Specification: Molecular Mechanisms Underlying Commitment and Plasticity

Response Comment on “Validity and Reliability of the Iranian Version of the Short Form Social Well Being Scale in a General Urban Population”

TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors

An integrated method for mutation detection using on-chip sample preparation, single-stranded conformation polymorphism, and heteroduplex analysis

BRD4 assists elongation of both coding and enhancer RNAs by interacting with acetylated histones

Do Memory CD4 T Cells Keep Their Cell-Type Programming: Plasticity versus Fate Commitment? Epigenome: A Dynamic Vehicle for Transmitting and Recording Cytokine Signaling

Joint profiling of chromatin accessibility and CAR-T integration site analysis at population and single-cell levels

Multiscale 3D genome organization underlies ILC2 ontogenesis and allergic airway inflammation

Intrinsically disordered domain of transcription factor TCF-1 is required for T cell developmental fidelity

Type I IFN induces binding of STAT1 to Bcl6: divergent roles of STAT family transcription factors in the T follicular helper cell genetic program

Long genes linked to autism spectrum disorders harbor broad enhancer-like chromatin domains

Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes

Single-cell expression profiling of islets generated by the Human Pancreas Analysis Program

Enhancing the understanding of asthma

Modeling type 1 diabetes progression using machine learning and single-cell transcriptomic measurements in human islets

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