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Two Simple and Efficient Algorithms to Compute the SP-Score Objective Function of a Multiple Sequence Alignment

PloS one, 2016-08, Vol.11 (8), p.e0160043-e0160043

2016

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MACSE v2: Toolkit for the Alignment of Coding Sequences Accounting for Frameshifts and Stop Codons

Molecular biology and evolution, 2018-10, Vol.35 (10), p.2582-2584

2018

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Origin and Diversity of Plant Receptor-Like Kinases

Annual review of plant biology, 2020-04, Vol.71 (1), p.131-156

2020

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EBCR: Empirical Bayes concordance ratio method to improve similarity measurement in memory-based collaborative filtering

PloS one, 2021-08, Vol.16 (8), p.e0255929-19

2021

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MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

PloS one, 2011-09, Vol.6 (9), p.e22594-e22594

2011

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A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

Frontiers in zoology, 2013-06, Vol.10 (1), p.34-34

2013

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Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals

Molecular biology and evolution, 2013-09, Vol.30 (9), p.2134-2144

2013

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GeCKO: user-friendly workflows for genotyping complex genomes using target enrichment capture. A use case on the large tetraploid durum wheat genome

Plant methods, 2024-07, Vol.20 (1), p.103-19, Article 103

2024

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Domestication reduces alternative splicing expression variations in sorghum

PloS one, 2017, Vol.12 (9), p.e0183454-e0183454

2017

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GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates

Trends in genetics, 2009-01, Vol.25 (1), p.1-5

2009

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Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti

Nucleic acids research, 2012-10, Vol.40 (18), p.9102-9114

2012

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OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics

BMC evolutionary biology, 2007-11, Vol.7 (1), p.241

2007

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Pitfalls in supermatrix phylogenomics

European journal of taxonomy, 2017-02, Vol.283 (283), p.1-25

2017

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Efficient algorithms for Longest Common Subsequence of two bucket orders to speed up pairwise genetic map comparison

PloS one, 2018-12, Vol.13 (12), p.e0208838-e0208838

2018

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Pervasive hybridizations in the history of wheat relatives

Science advances, 2019-05, Vol.5 (5), p.eaav9188

2019

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Genotyping by Sequencing Using Specific Allelic Capture to Build a High-Density Genetic Map of Durum Wheat

PloS one, 2016-05, Vol.11 (5), p.e0154609-e0154609

2016

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Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods

PloS one, 2013-10, Vol.8 (10), p.e73667-e73667

2013

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User centered and ontology based information retrieval system for life sciences

BMC bioinformatics, 2012-01, Vol.13 Suppl 1 (Suppl 1), p.S4-S4, Article S4

2012

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Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift

Ecology and evolution, 2022-01, Vol.12 (1), p.e8555-n/a

2022

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Plant Defensin type 1 (PDF1): protein promiscuity and expression variation within the Arabidopsis genus shed light on zinc tolerance acquisition in Arabidopsis halleri

The New phytologist, 2013-11, Vol.200 (3), p.820-833

2013

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Insights into the evolution, virulence and speciation of Babesia MO1 and Babesia divergens through multiomics analyses

Emerging microbes & infections, 2024-12, Vol.13 (1), p.2386136

2024

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Multiple molecular evidences for a living mammalian fossil

Proceedings of the National Academy of Sciences - PNAS, 2007-05, Vol.104 (18), p.7495-7499

2007

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Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping

PloS one, 2012-03, Vol.7 (3), p.e33852

2012

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Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae)

BMC evolutionary biology, 2011-06, Vol.11 (1), p.181, Article 181

2011

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Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

BMC bioinformatics, 2006-04, Vol.7 (1), p.188-188, Article 188

2006

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Two Simple and Efficient Algorithms to Compute the SP-Score Objective Function of a Multiple Sequence Alignment

MACSE v2: Toolkit for the Alignment of Coding Sequences Accounting for Frameshifts and Stop Codons

Origin and Diversity of Plant Receptor-Like Kinases

EBCR: Empirical Bayes concordance ratio method to improve similarity measurement in memory-based collaborative filtering

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals

GeCKO: user-friendly workflows for genotyping complex genomes using target enrichment capture. A use case on the large tetraploid durum wheat genome

Domestication reduces alternative splicing expression variations in sorghum

GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates

Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti

OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics

Pitfalls in supermatrix phylogenomics

Efficient algorithms for Longest Common Subsequence of two bucket orders to speed up pairwise genetic map comparison

Pervasive hybridizations in the history of wheat relatives

Genotyping by Sequencing Using Specific Allelic Capture to Build a High-Density Genetic Map of Durum Wheat

Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods

User centered and ontology based information retrieval system for life sciences

Evolution of flowering time in a selfing annual plant: Roles of adaptation and genetic drift

Plant Defensin type 1 (PDF1): protein promiscuity and expression variation within the Arabidopsis genus shed light on zinc tolerance acquisition in Arabidopsis halleri

Insights into the evolution, virulence and speciation of Babesia MO1 and Babesia divergens through multiomics analyses

Multiple molecular evidences for a living mammalian fossil

Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping

Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae)

Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

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