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Transfer-PCR (TPCR): A highway for DNA cloning and protein engineering

Journal of structural biology, 2011-08, Vol.175 (2), p.171-177

2011

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Analysis of Structural Features Contributing to Weak Affinities of Ubiquitin/Protein Interactions

Journal of molecular biology, 2017-11, Vol.429 (22), p.3353-3362

2017

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Predicting affinity- and specificity-enhancing mutations at protein-protein interfaces

Biochemical Society transactions, 2013-10, Vol.41 (5), p.1166

2013

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A single-tube assembly of DNA using the transfer-PCR (TPCR) platform

Methods in molecular biology (Clifton, N.J.), 2014-01, Vol.1116, p.89

2014

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Cold Spots in Protein Binding

Trends in biochemical sciences (Amsterdam. Regular ed.), 2016-09, Vol.41 (9), p.739-745

2016

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Protein Engineering by Combined Computational and In Vitro Evolution Approaches

Trends in biochemical sciences (Amsterdam. Regular ed.), 2016-05, Vol.41 (5), p.421-433

2016

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Climbing Up and Down Binding Landscapes through Deep Mutational Scanning of Three Homologous Protein–Protein Complexes

Journal of the American Chemical Society, 2021-10, Vol.143 (41), p.17261-17275

2021

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Designed Loop Extension Followed by Combinatorial Screening Confers High Specificity to a Broad Matrix MetalloproteinaseInhibitor

Journal of molecular biology, 2023-07, Vol.435 (13), p.168095, Article 168095

2023

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Editorial overview: Engineering and design: New trends in designer proteins

Current opinion in structural biology, 2017-08, Vol.45, p.iv-vi

2017

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Multispecific Recognition: Mechanism, Evolution, and Design

Biochemistry (Easton), 2011-02, Vol.50 (5), p.602-611

2011

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Identifying Residues that Determine SCF Molecular-Level Interactions through a Combination of Experimental and In silico Analyses

Journal of molecular biology, 2017-01, Vol.429 (1), p.97-114

2017

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Allosteric Modulation of Binding Specificity by Alternative Packing of Protein Cores

Journal of molecular biology, 2019-01, Vol.431 (2), p.336-350

2019

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Triathlon for energy functions: Who is the winner for design of protein-protein interactions?

Proteins, structure, function, and bioinformatics, 2011-05, Vol.79 (5), p.1487-1498

2011

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What Makes Ras an Efficient Molecular Switch: A Computational, Biophysical, and Structural Study of Ras-GDP Interactions with Mutants of Raf

Journal of molecular biology, 2010-06, Vol.399 (3), p.422-435

2010

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Computational Design of Calmodulin Mutants with up to 900-Fold Increase in Binding Specificity

Journal of molecular biology, 2009-02, Vol.385 (5), p.1470-1480

2009

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Alteration of the C-Terminal Ligand Specificity of the Erbin PDZ Domain by Allosteric Mutational Effects

Journal of molecular biology, 2014-10, Vol.426 (21), p.3500-3508

2014

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Optimizing energy functions for protein-protein interface design

Journal of computational chemistry, 2011-01, Vol.32 (1), p.23-32

2011

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Synthetic peptides mimicking the binding site of human acetylcholinesterase for its inhibitor fasciculin 2

Journal of peptide science, 2015-09, Vol.21 (9), p.723-730

2015

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Dead-end elimination for multistate protein design

Journal of computational chemistry, 2007-10, Vol.28 (13), p.2122-2129

2007

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Modulating Calmodulin Binding Specificity through Computational Protein Design

Journal of molecular biology, 2002-10, Vol.323 (3), p.417-423

2002

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Computational design of an integrin I domain stabilized in the open high affinity conformation

Nature structural & molecular biology, 2000-08, Vol.7 (8), p.674-678

2000

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Designed Loop Extension Followed by Combinatorial Screening Confers High Specificity to a Broad Matrix Metalloproteinase Inhibitor

Journal of molecular biology, 2023-07, Vol.435 (13), p.168095-168095, Article 168095

2023

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Computational Methods for Controlling Binding Specificity

Methods in Enzymology, 2013, Vol.523, p.41-59

2013

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Functionalized de Novo Designed Proteins: Mechanism of Proton Coupling to Oxidation/Reduction in Heme Protein Maquettes

Biochemistry (Easton), 1998-11, Vol.37 (47), p.16815-16827

1998

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Synthetic peptides mimicking the binding site of human acetylcholinesterase for its inhibitor fasciculin 2: AChE Mimetic Peptides

Journal of peptide science, 2015-09, Vol.21 (9), p.723-730

2015

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Transfer-PCR (TPCR): A highway for DNA cloning and protein engineering

Analysis of Structural Features Contributing to Weak Affinities of Ubiquitin/Protein Interactions

Predicting affinity- and specificity-enhancing mutations at protein-protein interfaces

A single-tube assembly of DNA using the transfer-PCR (TPCR) platform

Cold Spots in Protein Binding

Protein Engineering by Combined Computational and In Vitro Evolution Approaches

Climbing Up and Down Binding Landscapes through Deep Mutational Scanning of Three Homologous Protein–Protein Complexes

Designed Loop Extension Followed by Combinatorial Screening Confers High Specificity to a Broad Matrix MetalloproteinaseInhibitor

Editorial overview: Engineering and design: New trends in designer proteins

Multispecific Recognition: Mechanism, Evolution, and Design

Identifying Residues that Determine SCF Molecular-Level Interactions through a Combination of Experimental and In silico Analyses

Allosteric Modulation of Binding Specificity by Alternative Packing of Protein Cores

Triathlon for energy functions: Who is the winner for design of protein-protein interactions?

What Makes Ras an Efficient Molecular Switch: A Computational, Biophysical, and Structural Study of Ras-GDP Interactions with Mutants of Raf

Computational Design of Calmodulin Mutants with up to 900-Fold Increase in Binding Specificity

Alteration of the C-Terminal Ligand Specificity of the Erbin PDZ Domain by Allosteric Mutational Effects

Optimizing energy functions for protein-protein interface design

Synthetic peptides mimicking the binding site of human acetylcholinesterase for its inhibitor fasciculin 2

Dead-end elimination for multistate protein design

Modulating Calmodulin Binding Specificity through Computational Protein Design

Computational design of an integrin I domain stabilized in the open high affinity conformation

Designed Loop Extension Followed by Combinatorial Screening Confers High Specificity to a Broad Matrix Metalloproteinase Inhibitor

Computational Methods for Controlling Binding Specificity

Functionalized de Novo Designed Proteins: Mechanism of Proton Coupling to Oxidation/Reduction in Heme Protein Maquettes

Synthetic peptides mimicking the binding site of human acetylcholinesterase for its inhibitor fasciculin 2: AChE Mimetic Peptides

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