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Packaging and containerization of computational methods

Nature protocols, 2024-09, Vol.19 (9), p.2529-2539

2024

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Genomic reproducibility in the bioinformatics era

Genome Biology, 2024-08, Vol.25 (1), p.213-15, Article 213

2024

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VISTA: an integrated framework for structural variant discovery

Briefings in bioinformatics, 2024-07, Vol.25 (5)

2024

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Analytical code sharing practices in biomedical research

PeerJ. Computer science, 2024-06, Vol.10, p.e2066, Article e2066

2024

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Estimating Enzyme Expression and Metabolic Pathway Activity in Borreliella -Infected and Uninfected Mice

Journal of computational biology, 2024-06

2024

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Early detection of emerging viral variants through analysis of community structure of coordinated substitution networks

Nature communications, 2024-04, Vol.15 (1), p.2838-2838, Article 2838

2024

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Abstract 7011: The DNA methylation landscape across the TCR loci genes in patients with acute myeloid leukemia

Cancer research (Chicago, Ill.), 2024-03, Vol.84 (6_Supplement), p.7011-7011

2024

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The knowns and unknowns of long COVID-19: from mechanisms to therapeutical approaches

Frontiers in immunology, 2024-03, Vol.15, p.1344086

2024

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Large-scale integrative analysis of juvenile idiopathic arthritis for new insight into its pathogenesis

Arthritis research & therapy, 2024-02, Vol.26 (1), p.47-47, Article 47

2024

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Community Structure and Temporal Dynamics of Viral Epistatic Networks Allow for Early Detection of Emerging Variants with Altered Phenotypes

Research in Computational Molecular Biology, 2024, Vol.14758, p.356-359

2024

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Whole blood transcriptomics identifies subclasses of pediatric septic shock

Critical care (London, England), 2023-12, Vol.27 (1), p.486-486, Article 486

2023

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Fasting-Mimicking Diet Inhibits Autophagy and Synergizes with Chemotherapy to Promote T-Cell-Dependent Leukemia-Free Survival

Cancers, 2023-12, Vol.15 (24), p.5870

2023

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Response to ‘comment on rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing’ by Davydov A.N.; Bolotin D.A.; Poslavsky S. V. and Chudakov D.M

Briefings in bioinformatics, 2023-09, Vol.24 (6)

2023

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The Genomic Landscape of Colorectal Cancer in the Saudi Arabian Population Using a Comprehensive Genomic Panel

Diagnostics (Basel), 2023-09, Vol.13 (18), p.2993

2023

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Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing

Briefings in bioinformatics, 2023-07, Vol.24 (4)

2023

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Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

Genome Biology, 2023-05, Vol.24 (1), p.119-11, Article 119

2023

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The Coming of Age of Nucleic Acid Vaccines during COVID-19

mSystems, 2023-04, Vol.8 (2), p.e0092822-e0092822

2023

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Application of Traditional Vaccine Development Strategies to SARS-CoV-2

mSystems, 2023-04, Vol.8 (2), p.e0092722

2023

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RNA-seq data science: From raw data to effective interpretation

Frontiers in genetics, 2023-03, Vol.14, p.997383-997383

2023

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ABCAE: Artificial Bee Colony Algorithm with Adaptive Exploitation for Epistatic Interaction Detection

Bioinformatics Research and Applications, 2023, Vol.14248, p.190-201

2023

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Intro

Bioinformatics Research and Applications, 2023, Vol.14248

2023

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A Brief Study of Gene Co-expression Thresholding Algorithms

Bioinformatics Research and Applications, 2023, Vol.14248, p.420-430

2023

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TCSA: A Text-Guided Cross-View Medical Semantic Alignment Framework for Adaptive Multi-view Visual Representation Learning

Bioinformatics Research and Applications, 2023, Vol.14248, p.136-149

2023

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NeoMS: Identification of Novel MHC-I Peptides with Tandem Mass Spectrometry

Bioinformatics Research and Applications, 2023, Vol.14248, p.280-291

2023

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Bioinformatics Research and Applications: 19th International Symposium, ISBRA 2023, Wrocław, Poland, October 9-12, 2023, Proceedings

1, 2023

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Packaging and containerization of computational methods

Genomic reproducibility in the bioinformatics era

VISTA: an integrated framework for structural variant discovery

Analytical code sharing practices in biomedical research

Estimating Enzyme Expression and Metabolic Pathway Activity in Borreliella -Infected and Uninfected Mice

Early detection of emerging viral variants through analysis of community structure of coordinated substitution networks

Abstract 7011: The DNA methylation landscape across the TCR loci genes in patients with acute myeloid leukemia

The knowns and unknowns of long COVID-19: from mechanisms to therapeutical approaches

Large-scale integrative analysis of juvenile idiopathic arthritis for new insight into its pathogenesis

Community Structure and Temporal Dynamics of Viral Epistatic Networks Allow for Early Detection of Emerging Variants with Altered Phenotypes

Whole blood transcriptomics identifies subclasses of pediatric septic shock

Fasting-Mimicking Diet Inhibits Autophagy and Synergizes with Chemotherapy to Promote T-Cell-Dependent Leukemia-Free Survival

Response to ‘comment on rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing’ by Davydov A.N.; Bolotin D.A.; Poslavsky S. V. and Chudakov D.M

The Genomic Landscape of Colorectal Cancer in the Saudi Arabian Population Using a Comprehensive Genomic Panel

Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing

Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

The Coming of Age of Nucleic Acid Vaccines during COVID-19

Application of Traditional Vaccine Development Strategies to SARS-CoV-2

RNA-seq data science: From raw data to effective interpretation

ABCAE: Artificial Bee Colony Algorithm with Adaptive Exploitation for Epistatic Interaction Detection

Intro

A Brief Study of Gene Co-expression Thresholding Algorithms

TCSA: A Text-Guided Cross-View Medical Semantic Alignment Framework for Adaptive Multi-view Visual Representation Learning

NeoMS: Identification of Novel MHC-I Peptides with Tandem Mass Spectrometry

Bioinformatics Research and Applications: 19th International Symposium, ISBRA 2023, Wrocław, Poland, October 9-12, 2023, Proceedings

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