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Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer

Science (American Association for the Advancement of Science), 2018-01, Vol.359 (6373)

2018

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Systematic Assessment of Burst Impurity in Confocal-Based Single-Molecule Fluorescence Detection Using Brownian Motion Simulations

Molecules (Basel, Switzerland), 2019-07, Vol.24 (14), p.2557

2019

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Characterizing highly dynamic conformational states: The transcription bubble in RNAP-promoter open complex as an example

The Journal of chemical physics, 2018-03, Vol.148 (12), p.123315-123315

2018

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FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET

PloS one, 2016-08, Vol.11 (8), p.e0160716-e0160716

2016

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Multi-parameter photon-by-photon hidden Markov modeling

Nature communications, 2022-02, Vol.13 (1), p.1000-12, Article 1000

2022

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Identification and quantification of within-burst dynamics in singly labeled single-molecule fluorescence lifetime experiments

Biophysical reports, 2022-09, Vol.2 (3), p.100071, Article 100071

2022

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Förster resonance energy transfer and protein-induced fluorescence enhancement as synergetic multi-scale molecular rulers

Scientific reports, 2016-09, Vol.6 (1), p.33257-33257, Article 33257

2016

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Evidence for a compact σ70 conformation in vitro and in vivo

iScience, 2024-06, Vol.27 (6), p.110140, Article 110140

2024

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Fluorescent protein lifetimes report densities and phases of nuclear condensates during embryonic stem-cell differentiation

Nature communications, 2023-08, Vol.14 (1), p.4885-4885, Article 4885

2023

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Multispot single-molecule FRET: High-throughput analysis of freely diffusing molecules

PloS one, 2017-04, Vol.12 (4), p.e0175766-e0175766

2017

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Multiple conformations of full-length p53 detected with single-molecule fluorescence resonance energy transfer

Proceedings of the National Academy of Sciences - PNAS, 2009-12, Vol.106 (49), p.20758-20763

2009

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Utilizing Time-Resolved Protein-Induced Fluorescence Enhancement to Identify Stable Local Conformations One α-Synuclein Monomer at a Time

Journal of visualized experiments, 2021-05 (171)

2021

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Different types of pausing modes during transcription initiation

Transcription, 2017-08, Vol.8 (4), p.242-253

2017

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Correction to “Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET”

The journal of physical chemistry. B, 2023-01, Vol.127 (3), p.807-807

2023

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Utilizing Time-Resolved Protein-Induced Fluorescence Enhancement to Identify Stable Local Conformations One α-Synuclein Monomer at a Time

Journal of visualized experiments, 2021-05 (171)

2021

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Phytoplankton cell‐states: multiparameter fluorescence lifetime flow‐based monitoring reveals cellular heterogeneity

The FEBS journal, 2024-08

2024

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Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET

The journal of physical chemistry. B, 2018-12, Vol.122 (49), p.11598-11615

2018

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A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement-Förster-Type Resonance Energy Transfer (PIFE-FRET)

The journal of physical chemistry. B, 2016-07, Vol.120 (26), p.6401-6410

2016

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Multifunctions of α‐Synuclein Explained by Its Dynamic Heterogeneous Conformations with a Hierarchy of Transition Times

The FASEB journal, 2022-05, Vol.36 (S1), p.n/a

2022

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Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins

Nature methods, 2023-04, Vol.20 (4), p.523-535

2023

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The effect of macromolecular crowding on single-round transcription by Escherichia coli RNA polymerase

Nucleic acids research, 2019-02, Vol.47 (3), p.1440-1450

2019

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Backtracked and paused transcription initiation intermediate of Escherichia coli RNA polymerase

Proceedings of the National Academy of Sciences - PNAS, 2016-10, Vol.113 (43), p.E6562-E6571

2016

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A folding transition underlies the emergence of membrane affinity in amyloid-β

Physical chemistry chemical physics : PCCP, 2013-11, Vol.15 (44), p.19129-19133

2013

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Studying transcription initiation by RNA polymerase with diffusion‐based single‐molecule fluorescence

Protein science, 2017-07, Vol.26 (7), p.1278-1290

2017

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Rapid and specific detection of nanoparticles and viruses one at a time using microfluidic laminar flow and confocal fluorescence microscopy

iScience, 2024-09, p.110982, Article 110982

2024

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Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer

Systematic Assessment of Burst Impurity in Confocal-Based Single-Molecule Fluorescence Detection Using Brownian Motion Simulations

Characterizing highly dynamic conformational states: The transcription bubble in RNAP-promoter open complex as an example

FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET

Multi-parameter photon-by-photon hidden Markov modeling

Identification and quantification of within-burst dynamics in singly labeled single-molecule fluorescence lifetime experiments

Förster resonance energy transfer and protein-induced fluorescence enhancement as synergetic multi-scale molecular rulers

Evidence for a compact σ70 conformation in vitro and in vivo

Fluorescent protein lifetimes report densities and phases of nuclear condensates during embryonic stem-cell differentiation

Multispot single-molecule FRET: High-throughput analysis of freely diffusing molecules

Multiple conformations of full-length p53 detected with single-molecule fluorescence resonance energy transfer

Utilizing Time-Resolved Protein-Induced Fluorescence Enhancement to Identify Stable Local Conformations One α-Synuclein Monomer at a Time

Different types of pausing modes during transcription initiation

Correction to “Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET”

Utilizing Time-Resolved Protein-Induced Fluorescence Enhancement to Identify Stable Local Conformations One α-Synuclein Monomer at a Time

Phytoplankton cell‐states: multiparameter fluorescence lifetime flow‐based monitoring reveals cellular heterogeneity

Monte Carlo Diffusion-Enhanced Photon Inference: Distance Distributions and Conformational Dynamics in Single-Molecule FRET

A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement-Förster-Type Resonance Energy Transfer (PIFE-FRET)

Multifunctions of α‐Synuclein Explained by Its Dynamic Heterogeneous Conformations with a Hierarchy of Transition Times

Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins

The effect of macromolecular crowding on single-round transcription by Escherichia coli RNA polymerase

Backtracked and paused transcription initiation intermediate of Escherichia coli RNA polymerase

A folding transition underlies the emergence of membrane affinity in amyloid-β

Studying transcription initiation by RNA polymerase with diffusion‐based single‐molecule fluorescence

Rapid and specific detection of nanoparticles and viruses one at a time using microfluidic laminar flow and confocal fluorescence microscopy

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