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HybPhyloMaker: Target Enrichment Data Analysis From Raw Reads to Species Trees

Evolutionary bioinformatics online, 2018, Vol.14, p.1176934317742613-1176934317742613

2018

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Glacial survival in northern refugia? Phylogeography of the temperate shrub Rosa pendulina L. (Rosaceae): AFLP vs. chloroplast DNA variation

Biological journal of the Linnean Society, 2016-11, Vol.119 (3), p.704-718

2016

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Phylogeny of Globba section Nudae and taxonomic revision of the new Globba subsection Pelecantherae

Plant systematics and evolution, 2022-02, Vol.308 (1), Article 5

2022

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Intraspecific differentiation of Sparganium erectum in the Czech Republic: molecular, genome size and morphometric analysis

Preslia (Praha), 2020, Vol.92 (2)

2020

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Convergent morphology in Alpinieae (Zingiberaceae): Recircumscribing Amomum as a monophyletic genus

Taxon, 2018-02, Vol.67 (1), p.6-36

2018

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Utilizing paralogues for phylogenetic reconstruction has the potential to increase species tree support and reduce gene tree discordance in target enrichment data

Molecular ecology resources, 2022-11, Vol.22 (8), p.3018-3034

2022

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The cardamom conundrum resolved: Recircumscription and placement of Elettaria in the only pantropically distributed ginger lineage

Taxon, 2024-10, Vol.73 (5), p.1187-1213

2024

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Phylogenomic insights into the Fascicularia-Ochagavia group (Bromelioideae, Bromeliaceae)

Botanical journal of the Linnean Society, 2020-03, Vol.192 (4), p.642-655

2020

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Is Betula carpatica genetically distinctive? A morphometric, cytometric and molecular study of birches in the Bohemian Massif with a focus on Carpathian birch

PloS one, 2019-10, Vol.14 (10), p.e0224387

2019

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Ancient hybridization and repetitive element proliferation in the evolutionary history of the monocot genus Amomum (Zingiberaceae)

Frontiers in plant science, 2024, Vol.15, p.1324358-1324358

2024

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Ancient hybridization in Curcuma (Zingiberaceae)-Accelerator or brake in lineage diversifications?

The Plant journal : for cell and molecular biology, 2023-11, Vol.116 (3), p.773-785

2023

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The origin of unique diversity in deglaciated areas: traces of Pleistocene processes in north-European endemics from the Galium pusillum polyploid complex (Rubiaceae)

Molecular ecology, 2015-03, Vol.24 (6), p.1311-1334

2015

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Phylogeny of Curcuma (Zingiberaceae) based on plastid and nuclear sequences: Proposal of the new subgenus Ecomata

Taxon, 2012-08, Vol.61 (4), p.747-763

2012

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Relative performance of customized and universal probe sets in target enrichment: A case study in subtribe Malinae

Applications in plant sciences, 2021-07, Vol.9 (7), p.e11442-n/a

2021

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Anagenetic evolution in island plants

Journal of biogeography, 2006-07, Vol.33 (7), p.1259-1265

2006

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An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae

Applications in plant sciences, 2019-10, Vol.7 (10), p.e11295-n/a

2019

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Detecting dispersal of Nuphar lutea in river corridors using microsatellite markers

Freshwater biology, 2008-07, Vol.53 (7), p.1409-1422

2008

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Growth form evolution and hybridization in Senecio (Asteraceae) from the high equatorial Andes

Ecology and evolution, 2017-08, Vol.7 (16), p.6455-6468

2017

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Ecological hybrid speciation in central-European species of Bolboschoenus: genetic and morphological evaluation

Preslia (Praha), 2017-02, Vol.89 (1), p.17-39

2017

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Phylogenetic signal in growth and reproductive traits and in their plasticity: the Descurainia radiation in the Canary Islands

Botanical journal of the Linnean Society, 2014-03, Vol.174 (3), p.384-398

2014

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Pattern of genetic differentiation in Gentiana pannonica Scop.: did subalpine plants survive glacial events at low altitudes in Central Europe?

Plant systematics and evolution, 2012-08, Vol.298 (7), p.1383-1397

2012

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Phylogeography of the forest herb Carex pilosa (Cyperaceae)

Botanical journal of the Linnean Society, 2008-09, Vol.158 (1), p.115-130

2008

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Genetic diversity patterns in Curcuma reflect differences in genome size

Botanical journal of the Linnean Society, 2011-04, Vol.165 (4), p.388-401

2011

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Bringing together evolution on serpentine and polyploidy: spatiotemporal history of the diploid-tetraploid complex of Knautia arvensis (Dipsacaceae)

PloS one, 2012-07, Vol.7 (7), p.e39988-e39988

2012

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Diversity and endemism in deglaciated areas: ploidy, relative genome size and niche differentiation in the Galium pusillum complex (Rubiaceae) in Northern and Central Europe

Annals of botany, 2013-06, Vol.111 (6), p.1095-1108

2013

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HybPhyloMaker: Target Enrichment Data Analysis From Raw Reads to Species Trees

Glacial survival in northern refugia? Phylogeography of the temperate shrub Rosa pendulina L. (Rosaceae): AFLP vs. chloroplast DNA variation

Phylogeny of Globba section Nudae and taxonomic revision of the new Globba subsection Pelecantherae

Intraspecific differentiation of Sparganium erectum in the Czech Republic: molecular, genome size and morphometric analysis

Convergent morphology in Alpinieae (Zingiberaceae): Recircumscribing Amomum as a monophyletic genus

Utilizing paralogues for phylogenetic reconstruction has the potential to increase species tree support and reduce gene tree discordance in target enrichment data

The cardamom conundrum resolved: Recircumscription and placement of Elettaria in the only pantropically distributed ginger lineage

Phylogenomic insights into the Fascicularia-Ochagavia group (Bromelioideae, Bromeliaceae)

Is Betula carpatica genetically distinctive? A morphometric, cytometric and molecular study of birches in the Bohemian Massif with a focus on Carpathian birch

Ancient hybridization and repetitive element proliferation in the evolutionary history of the monocot genus Amomum (Zingiberaceae)

Ancient hybridization in Curcuma (Zingiberaceae)-Accelerator or brake in lineage diversifications?

The origin of unique diversity in deglaciated areas: traces of Pleistocene processes in north-European endemics from the Galium pusillum polyploid complex (Rubiaceae)

Phylogeny of Curcuma (Zingiberaceae) based on plastid and nuclear sequences: Proposal of the new subgenus Ecomata

Relative performance of customized and universal probe sets in target enrichment: A case study in subtribe Malinae

Anagenetic evolution in island plants

An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae

Detecting dispersal of Nuphar lutea in river corridors using microsatellite markers

Growth form evolution and hybridization in Senecio (Asteraceae) from the high equatorial Andes

Ecological hybrid speciation in central-European species of Bolboschoenus: genetic and morphological evaluation

Phylogenetic signal in growth and reproductive traits and in their plasticity: the Descurainia radiation in the Canary Islands

Pattern of genetic differentiation in Gentiana pannonica Scop.: did subalpine plants survive glacial events at low altitudes in Central Europe?

Phylogeography of the forest herb Carex pilosa (Cyperaceae)

Genetic diversity patterns in Curcuma reflect differences in genome size

Bringing together evolution on serpentine and polyploidy: spatiotemporal history of the diploid-tetraploid complex of Knautia arvensis (Dipsacaceae)

Diversity and endemism in deglaciated areas: ploidy, relative genome size and niche differentiation in the Galium pusillum complex (Rubiaceae) in Northern and Central Europe

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