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Stability and flexibility of epigenetic gene regulation in mammalian development

Nature, 2007-05, Vol.447 (7143), p.425-432

Reik, Wolf

2007

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DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning

Genome Biology, 2017-04, Vol.18 (1), p.67-67, Article 67

2017

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Epigenetic Reprogramming in Plant and Animal Development

Science (American Association for the Advancement of Science), 2010-10, Vol.330 (6004), p.622-627

2010

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Tracking the embryonic stem cell transition from ground state pluripotency

Development (Cambridge), 2017-04, Vol.144 (7), p.1221-1234

2017

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Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data

Genome Biology, 2018-03, Vol.19 (1), p.33-33, Article 33

2018

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Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution

Science (American Association for the Advancement of Science), 2012-05, Vol.336 (6083), p.934-937

2012

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scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

Nature communications, 2018-02, Vol.9 (1), p.781-9, Article 781

2018

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Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks

PLoS genetics, 2012-01, Vol.8 (1), p.e1002440-e1002440

2012

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Reprogramming DNA methylation in the mammalian life cycle: building and breaking epigenetic barriers

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2013-01, Vol.368 (1609), p.20110330

2013

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Dynamic regulation of 5―hydroxymethylcytosine in mouse ES cells and during differentiation

Nature (London), 2011-05, Vol.473 (7347), p.398-402

2011

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Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops

Nature genetics, 2004-08, Vol.36 (8), p.889-893

2004

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Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods

PLoS genetics, 2020-06, Vol.16 (6), p.e1008864-e1008864

2020

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Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

Genome Biology, 2017-03, Vol.18 (1), p.56-56, Article 56

2017

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Multi-omics profiling of mouse gastrulation at single-cell resolution

Nature (London), 2019-12, Vol.576 (7787), p.487-491

2019

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Single-Cell Landscape of Transcriptional Heterogeneity and Cell Fate Decisions during Mouse Early Gastrulation

Cell reports (Cambridge), 2017-08, Vol.20 (5), p.1215-1228

2017

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TET3 prevents terminal differentiation of adult NSCs by a non-catalytic action at Snrpn

Nature communications, 2019-04, Vol.10 (1), p.1726-1726, Article 1726

2019

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In utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism

Science (American Association for the Advancement of Science), 2014-08, Vol.345 (6198), p.785-785

2014

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Enhancer-associated H3K4 methylation safeguards in vitro germline competence

Nature communications, 2021-10, Vol.12 (1), p.5771-5771, Article 5771

2021

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Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency

Nature (London), 2010-02, Vol.463 (7284), p.1101-1105

2010

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Retinol and ascorbate drive erasure of epigenetic memory and enhance reprogramming to naïve pluripotency by complementary mechanisms

Proceedings of the National Academy of Sciences - PNAS, 2016-10, Vol.113 (43), p.12202-12207

2016

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5-Formylcytosine organizes nucleosomes and forms Schiff base interactions with histones in mouse embryonic stem cells

Nature chemistry, 2018-12, Vol.10 (12), p.1258

2018

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Epigenetic Reprogramming in Mammalian Development

Science (American Association for the Advancement of Science), 2001-08, Vol.293 (5532), p.1089-1093

2001

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Epigenetic reprogramming in mammals

Human molecular genetics, 2005-04, Vol.14 (suppl-1), p.R47-R58

2005

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Tet-mediated DNA hydroxymethylation regulates retinal neurogenesis by modulating cell-extrinsic signaling pathways

PLoS genetics, 2017-09, Vol.13 (9), p.e1006987-e1006987

2017

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Co-evolution of X-chromosome inactivation and imprinting in mammals

Nature reviews. Genetics, 2005-05, Vol.6 (5), p.403-410

2005

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Stability and flexibility of epigenetic gene regulation in mammalian development

DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning

Epigenetic Reprogramming in Plant and Animal Development

Tracking the embryonic stem cell transition from ground state pluripotency

Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data

Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks

Reprogramming DNA methylation in the mammalian life cycle: building and breaking epigenetic barriers

Dynamic regulation of 5―hydroxymethylcytosine in mouse ES cells and during differentiation

Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops

Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods

Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

Multi-omics profiling of mouse gastrulation at single-cell resolution

Single-Cell Landscape of Transcriptional Heterogeneity and Cell Fate Decisions during Mouse Early Gastrulation

TET3 prevents terminal differentiation of adult NSCs by a non-catalytic action at Snrpn

In utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism

Enhancer-associated H3K4 methylation safeguards in vitro germline competence

Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency

Retinol and ascorbate drive erasure of epigenetic memory and enhance reprogramming to naïve pluripotency by complementary mechanisms

5-Formylcytosine organizes nucleosomes and forms Schiff base interactions with histones in mouse embryonic stem cells

Epigenetic Reprogramming in Mammalian Development

Epigenetic reprogramming in mammals

Tet-mediated DNA hydroxymethylation regulates retinal neurogenesis by modulating cell-extrinsic signaling pathways

Co-evolution of X-chromosome inactivation and imprinting in mammals

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