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Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs

Protein science, 2018-01, Vol.27 (1), p.159-171

Heymann, J. Bernard

2018

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Single particle reconstruction and validation using Bsoft for the map challenge

Journal of structural biology, 2018-10, Vol.204 (1), p.90-95

Heymann, J. Bernard

2018

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Structural Studies of Bacteriophage Φ6 and Its Transformations during Its Life Cycle

Viruses, 2023-12, Vol.15 (12), p.2404

Heymann, J Bernard

2023

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FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation

Nature communications, 2021-01, Vol.12 (1), p.42-42, Article 42

2021

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Bsoft: Image processing and molecular modeling for electron microscopy

Journal of structural biology, 2007, Vol.157 (1), p.3-18

2007

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Influenza Virus Pleiomorphy Characterized by Cryoelectron Tomography

Proceedings of the National Academy of Sciences - PNAS, 2006-12, Vol.103 (50), p.19123-19127

2006

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HIV-1 Maturation Inhibitor Bevirimat Stabilizes the Immature Gag Lattice

Journal of Virology, 2011-02, Vol.85 (4), p.1420-1428

2011

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The Ewald sphere/focus gradient does not limit the resolution of cryoEM reconstructions

Journal of structural biology. X, 2023-01, Vol.7, p.100083, Article 100083

Heymann, J. Bernard

2023

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Structural Changes in Influenza Virus at Low pH Characterized by Cryo-Electron Tomography

Journal of Virology, 2012-03, Vol.86 (6), p.2919-2929

2012

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A Two-Pronged Structural Analysis of Retroviral Maturation Indicates that Core Formation Proceeds by a Disassembly-Reassembly Pathway Rather than a Displacive Transition

Journal of Virology, 2013-12, Vol.87 (24), p.13655-13664

2013

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Bsoft: Image Processing for Structural Biology

Bio-protocol, 2022-04, Vol.12 (8), p.e4393-e4393

Heymann, Bernard J

2022

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The Primary Enveloped Virion of Herpes Simplex Virus 1: Its Role in Nuclear Egress

mBio, 2017-06, Vol.8 (3)

2017

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Cryo-Electron Tomography of the Herpesvirus Procapsid Reveals Interactions of the Portal with the Scaffold and a Shift on Maturation

mBio, 2021-03, Vol.12 (2)

2021

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Subunit Folds and Maturation Pathway of a dsRNA Virus Capsid

Structure (London), 2013-08, Vol.21 (8), p.1374-1383

2013

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High resolution electron tomography and segmentation‐by‐modeling interpretation in Bsoft

Protein science, 2021-01, Vol.30 (1), p.44-59

Heymann, J. Bernard

2021

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The Structure of HIV-1 Rev Filaments Suggests a Bilateral Model for Rev-RRE Assembly

Structure (London), 2016-07, Vol.24 (7), p.1068-1080

2016

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One number does not fit all: Mapping local variations in resolution in cryo-EM reconstructions

Journal of structural biology, 2013-11, Vol.184 (2), p.226-236

2013

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The progressive spectral signal-to-noise ratio of cryo-electron micrograph movies as a tool to assess quality and radiation damage

Computer methods and programs in biomedicine, 2022-06, Vol.220, p.106799-106799, Article 106799

Heymann, J Bernard

2022

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Three-Dimensional Structure of Herpes Simplex Virus from Cryo-Electron Tomography

Science (American Association for the Advancement of Science), 2003-11, Vol.302 (5649), p.1396-1398

2003

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Three-dimensional Structure of the Toxin-delivery Particle Antifeeding Prophage of Serratia entomophila

The Journal of biological chemistry, 2013-08, Vol.288 (35), p.25276-25284

2013

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Validation of 3D EM Reconstructions: The Phantom in the Noise

AIMS biophysics, 2015-01, Vol.2 (1), p.21-35

Heymann, J Bernard

2015

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The Mottled Capsid of the Salmonella Giant Phage SPN3US, a Likely Maturation Intermediate with a Novel Internal Shell

Viruses, 2020-08, Vol.12 (9), p.910

2020

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Atomic structures of an entire contractile injection system in both the extended and contracted states

Nature microbiology, 2019-11, Vol.4 (11), p.1885-1894

2019

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Towards an atlas of mammalian cell ultrastructure by cryo soft X-ray tomography

Journal of structural biology, 2012-02, Vol.177 (2), p.179-192

2012

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Computational resources for cryo-electron tomography in Bsoft

Journal of structural biology, 2008-03, Vol.161 (3), p.232-242

2008

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Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs

Single particle reconstruction and validation using Bsoft for the map challenge

Structural Studies of Bacteriophage Φ6 and Its Transformations during Its Life Cycle

FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation

Bsoft: Image processing and molecular modeling for electron microscopy

Influenza Virus Pleiomorphy Characterized by Cryoelectron Tomography

HIV-1 Maturation Inhibitor Bevirimat Stabilizes the Immature Gag Lattice

The Ewald sphere/focus gradient does not limit the resolution of cryoEM reconstructions

Structural Changes in Influenza Virus at Low pH Characterized by Cryo-Electron Tomography

A Two-Pronged Structural Analysis of Retroviral Maturation Indicates that Core Formation Proceeds by a Disassembly-Reassembly Pathway Rather than a Displacive Transition

Bsoft: Image Processing for Structural Biology

The Primary Enveloped Virion of Herpes Simplex Virus 1: Its Role in Nuclear Egress

Cryo-Electron Tomography of the Herpesvirus Procapsid Reveals Interactions of the Portal with the Scaffold and a Shift on Maturation

Subunit Folds and Maturation Pathway of a dsRNA Virus Capsid

High resolution electron tomography and segmentation‐by‐modeling interpretation in Bsoft

The Structure of HIV-1 Rev Filaments Suggests a Bilateral Model for Rev-RRE Assembly

One number does not fit all: Mapping local variations in resolution in cryo-EM reconstructions

The progressive spectral signal-to-noise ratio of cryo-electron micrograph movies as a tool to assess quality and radiation damage

Three-Dimensional Structure of Herpes Simplex Virus from Cryo-Electron Tomography

Three-dimensional Structure of the Toxin-delivery Particle Antifeeding Prophage of Serratia entomophila

Validation of 3D EM Reconstructions: The Phantom in the Noise

The Mottled Capsid of the Salmonella Giant Phage SPN3US, a Likely Maturation Intermediate with a Novel Internal Shell

Atomic structures of an entire contractile injection system in both the extended and contracted states

Towards an atlas of mammalian cell ultrastructure by cryo soft X-ray tomography

Computational resources for cryo-electron tomography in Bsoft

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