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From Discrete to Continuum Models of Three-Dimensional Deformations in Epithelial Sheets

Biophysical journal, 2015-07, Vol.109 (1), p.154-163

2015

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Shape Transformations of Epithelial Shells

Biophysical journal, 2016-04, Vol.110 (7), p.1670-1678

2016

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Dynamics of Inductive ERK Signaling in the Drosophila Embryo

Current biology, 2015-06, Vol.25 (13), p.1784-1790

2015

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Bistability and oscillations in the Huang-Ferrell model of MAPK signaling

PLoS computational biology, 2007-09, Vol.3 (9), p.1819-1826

2007

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Emergent Spaces for Coupled Oscillators

Frontiers in computational neuroscience, 2020-05, Vol.14, p.36-36

2020

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A Data–Driven Approximation of the Koopman Operator: Extending Dynamic Mode Decomposition

Journal of nonlinear science, 2015-12, Vol.25 (6), p.1307-1346

2015

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Synthesizing developmental trajectories

PLoS computational biology, 2017-09, Vol.13 (9), p.e1005742-e1005742

2017

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Substrate-Dependent Control of ERK Phosphorylation Can Lead to Oscillations

Biophysical journal, 2011-12, Vol.101 (11), p.2572-2581

2011

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Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data

Journal of mathematical biology, 2023-07, Vol.87 (1), p.15-15, Article 15

2023

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Designing networks with resiliency to edge failures using two-stage robust optimization

European journal of operational research, 2019-12, Vol.279 (3), p.704-720

2019

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Coarse-Grained Descriptions of Dynamics for Networks with Both Intrinsic and Structural Heterogeneities

Frontiers in computational neuroscience, 2017-06, Vol.11, p.43-43

2017

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Manifold learning for parameter reduction

Journal of computational physics, 2019-09, Vol.392, p.419-431

2019

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Physics-agnostic and physics-infused machine learning for thin films flows: modelling, and predictions from small data

Journal of fluid mechanics, 2023-11, Vol.975, Article A41

2023

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Nonlinear dimensionality reduction in molecular simulation: The diffusion map approach

Chemical physics letters, 2011-06, Vol.509 (1), p.1-11

2011

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A general CFD framework for fault-resilient simulations based on multi-resolution information fusion

Journal of computational physics, 2017-10, Vol.347, p.290-304

2017

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Dynamic density functional theory of solid tumor growth: Preliminary models

AIP advances, 2012-03, Vol.2 (1), p.11210-11210

2012

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A resilient and efficient CFD framework: Statistical learning tools for multi-fidelity and heterogeneous information fusion

Journal of computational physics, 2017-09, Vol.344, p.516-533

2017

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Nonlinear behavior and fluctuation-induced dynamics in the photosensitive Belousov-Zhabotinsky reaction

Physical chemistry chemical physics : PCCP, 2017-08, Vol.19 (33), p.22528-22537

2017

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Cell Division Induces and Switches Coherent Angular Motion within Bounded Cellular Collectives

Biophysical journal, 2017-06, Vol.112 (11), p.2419-2427

2017

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Long-term p21 and p53 dynamics regulate the frequency of mitosis events and cell cycle arrest following radiation damage

Cell death and differentiation, 2023-03, Vol.30 (3), p.660-672

2023

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Droplet and slug formation in polymer electrolyte membrane fuel cell flow channels: The role of interfacial forces

Journal of power sources, 2011-12, Vol.196 (23), p.10057-10068

2011

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External-field-enabled surface nanopattern engineering (a perspective on the article “Current-driven morphological evolution of single-layer epitaxial islands on crystalline substrates” by D. Dasgupta, G. I. Sfyris and D. Maroudas)

Surface science, 2013-12, Vol.618, p.1-2

Kevrekidis, Ioannis G.

2013

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Equation-free analysis of spike-timing-dependent plasticity

Biological cybernetics, 2015-12, Vol.109 (6), p.701-714

2015

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Patch dynamics with buffers for homogenization problems

Journal of computational physics, 2006-03, Vol.213 (1), p.264-287

2006

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Equation-free multiscale computations for a lattice-gas model: coarse-grained bifurcation analysis of the NO+CO reaction on Pt(1 0 0)

Chemical engineering science, 2004-04, Vol.59 (8), p.1733-1743

2004

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From Discrete to Continuum Models of Three-Dimensional Deformations in Epithelial Sheets

Shape Transformations of Epithelial Shells

Dynamics of Inductive ERK Signaling in the Drosophila Embryo

Bistability and oscillations in the Huang-Ferrell model of MAPK signaling

Emergent Spaces for Coupled Oscillators

A Data–Driven Approximation of the Koopman Operator: Extending Dynamic Mode Decomposition

Synthesizing developmental trajectories

Substrate-Dependent Control of ERK Phosphorylation Can Lead to Oscillations

Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data

Designing networks with resiliency to edge failures using two-stage robust optimization

Coarse-Grained Descriptions of Dynamics for Networks with Both Intrinsic and Structural Heterogeneities

Manifold learning for parameter reduction

Physics-agnostic and physics-infused machine learning for thin films flows: modelling, and predictions from small data

Nonlinear dimensionality reduction in molecular simulation: The diffusion map approach

A general CFD framework for fault-resilient simulations based on multi-resolution information fusion

Dynamic density functional theory of solid tumor growth: Preliminary models

A resilient and efficient CFD framework: Statistical learning tools for multi-fidelity and heterogeneous information fusion

Nonlinear behavior and fluctuation-induced dynamics in the photosensitive Belousov-Zhabotinsky reaction

Cell Division Induces and Switches Coherent Angular Motion within Bounded Cellular Collectives

Long-term p21 and p53 dynamics regulate the frequency of mitosis events and cell cycle arrest following radiation damage

Droplet and slug formation in polymer electrolyte membrane fuel cell flow channels: The role of interfacial forces

External-field-enabled surface nanopattern engineering (a perspective on the article “Current-driven morphological evolution of single-layer epitaxial islands on crystalline substrates” by D. Dasgupta, G. I. Sfyris and D. Maroudas)

Equation-free analysis of spike-timing-dependent plasticity

Patch dynamics with buffers for homogenization problems

Equation-free multiscale computations for a lattice-gas model: coarse-grained bifurcation analysis of the NO+CO reaction on Pt(1 0 0)

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