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Navigating Non-Coding RNA: From Biogenesis to Therapeutic Application

Sztuba-Solinska, Joanna

1, 2023

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RNAplex: a fast tool for RNA–RNA interaction search

Bioinformatics, 2008-11, Vol.24 (22), p.2657-2663

2008

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RNA-seq in Drug Discovery and Development

First edition, 2024

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Naïve Bayes for microRNA target predictions—machine learning for microRNA targets

Bioinformatics, 2007-11, Vol.23 (22), p.2987-2992

2007

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Flavonols as potential antiviral drugs targeting SARS-CoV-2 proteases (3CLpro and PLpro), spike protein, RNA-dependent RNA polymerase (RdRp) and angiotensin-converting enzyme II receptor (ACE2)

European journal of pharmacology, 2021-01, Vol.891, p.173759-173759, Article 173759

2021

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Theoretical basis for stabilizing messenger RNA through secondary structure design

Nucleic acids research, 2021-10, Vol.49 (18), p.10604

2021

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A 360° view of circular RNAs: From biogenesis to functions

Wiley interdisciplinary reviews. RNA, 2018-07, Vol.9 (4), p.e1478-n/a

Wilusz, Jeremy E.

2018

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Long Non-Coding RNA HOXA Transcript Antisense RNA Myeloid-Specific 1-HOXA1 Axis Downregulates the Immunosuppressive Activity of Myeloid-Derived Suppressor Cells in Lung Cancer

Frontiers in immunology, 2018-03, Vol.9, p.473-473

2018

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Long non‐coding RNA FOXD2‐AS1 contributes to colorectal cancer proliferation through its interaction with microRNA‐185‐5p

Cancer science, 2018-07, Vol.109 (7), p.2235-2242

2018

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RNA Sequencing and Analysis

Cold Spring Harbor protocols, 2015-04, Vol.2015 (11), p.951

2015

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Position 34 of tRNA is a discriminative element for m5C38 modification by human DNMT2

Nucleic acids research, 2021-12, Vol.49 (22), p.13045

2021

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Nucleotide Analogues as Inhibitors of SARS-CoV‐2 Polymerase, a Key Drug Target for COVID-19

Journal of proteome research, 2020-11, Vol.19 (11), p.4690-4697

2020

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Rational design of oligonucleotides for enhanced in vitro transcription of small RNA

RNA (Cambridge), 2024-05, Vol.30 (6), p.710

2024

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N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency

Cell, 2015-06, Vol.161 (6), p.1388-1399

2015

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RNA-catalyzed evolution of catalytic RNA

Proceedings of the National Academy of Sciences - PNAS, 2024-03, Vol.121 (11), p.e2321592121

2024

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Plant-derived natural polyphenols as potential antiviral drugs against SARS-CoV-2 via RNA-dependent RNA polymerase (RdRp) inhibition: an in-silico analysis

Journal of biomolecular structure & dynamics, 2021-11, Vol.39 (16), p.6249-6264

2021

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Correction to “RNA-Guided RNA Modifications: Biogenesis, Functions, and Applications”

Accounts of chemical research, 2024-04, Vol.57 (7), p.1073-1075

2024

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Mapping RNA-Chromatin Interactions In Vivo with RNA-DamID

Methods in molecular biology (Clifton, N.J.), 2020, Vol.2161, p.255

2020

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Correction to “Cross-Chiral, RNA-Catalyzed Exponential Amplification of RNA”

Journal of the American Chemical Society, 2024-02, Vol.146 (5), p.3564-3564

2024

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Predicting RNA-RNA Interactions Using RNAstructure

Methods in molecular biology (Clifton, N.J.), 2016, Vol.1490, p.51

2016

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The long non-coding RNA BBOX1 antisense RNA 1 is upregulated in polycystic ovary syndrome (PCOS) and suppresses the role of microRNA-19b in the proliferation of ovarian granulose cells: Short title: BBOX1 antisense RNA 1 in cell proliferation

BMC women's health, 2023-09, Vol.23 (1), p.508-508, Article 508

2023

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109 LONG NONCODING RNA GAS5 REGULATES INTESTINAL EPITHELIAL BARRIER FUNCTION BY ALTERING ACTIVITY OF RNA-BINDING PROTEIN HUR

Gastroenterology (New York, N.Y. 1943), 2024-05, Vol.166 (5), p.S-30-S-30

2024

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Cap 1 Messenger RNA Synthesis with Co‐transcriptional CleanCap® Analog by In Vitro Transcription

Current protocols, 2021-02, Vol.1 (2), p.e39-n/a

2021

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Some RNA Viruses

2021

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Crystal structures of the RNA triphosphatase from Trypanosoma cruzi provide insights into how it recognizes the 5′-end of the RNA substrate

The Journal of biological chemistry, 2020-07, Vol.295 (27), p.9076-9086

2020

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Navigating Non-Coding RNA: From Biogenesis to Therapeutic Application

RNAplex: a fast tool for RNA–RNA interaction search

RNA-seq in Drug Discovery and Development

Naïve Bayes for microRNA target predictions—machine learning for microRNA targets

Flavonols as potential antiviral drugs targeting SARS-CoV-2 proteases (3CLpro and PLpro), spike protein, RNA-dependent RNA polymerase (RdRp) and angiotensin-converting enzyme II receptor (ACE2)

Theoretical basis for stabilizing messenger RNA through secondary structure design

A 360° view of circular RNAs: From biogenesis to functions

Long Non-Coding RNA HOXA Transcript Antisense RNA Myeloid-Specific 1-HOXA1 Axis Downregulates the Immunosuppressive Activity of Myeloid-Derived Suppressor Cells in Lung Cancer

Long non‐coding RNA FOXD2‐AS1 contributes to colorectal cancer proliferation through its interaction with microRNA‐185‐5p

RNA Sequencing and Analysis

Position 34 of tRNA is a discriminative element for m5C38 modification by human DNMT2

Nucleotide Analogues as Inhibitors of SARS-CoV‐2 Polymerase, a Key Drug Target for COVID-19

Rational design of oligonucleotides for enhanced in vitro transcription of small RNA

N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency

RNA-catalyzed evolution of catalytic RNA

Plant-derived natural polyphenols as potential antiviral drugs against SARS-CoV-2 via RNA-dependent RNA polymerase (RdRp) inhibition: an in-silico analysis

Correction to “RNA-Guided RNA Modifications: Biogenesis, Functions, and Applications”

Mapping RNA-Chromatin Interactions In Vivo with RNA-DamID

Correction to “Cross-Chiral, RNA-Catalyzed Exponential Amplification of RNA”

Predicting RNA-RNA Interactions Using RNAstructure

The long non-coding RNA BBOX1 antisense RNA 1 is upregulated in polycystic ovary syndrome (PCOS) and suppresses the role of microRNA-19b in the proliferation of ovarian granulose cells: Short title: BBOX1 antisense RNA 1 in cell proliferation

109 LONG NONCODING RNA GAS5 REGULATES INTESTINAL EPITHELIAL BARRIER FUNCTION BY ALTERING ACTIVITY OF RNA-BINDING PROTEIN HUR

Cap 1 Messenger RNA Synthesis with Co‐transcriptional CleanCap® Analog by In Vitro Transcription

Some RNA Viruses

Crystal structures of the RNA triphosphatase from Trypanosoma cruzi provide insights into how it recognizes the 5′-end of the RNA substrate

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