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An in silico approach to the identification of diagnostic and prognostic markers in low-grade gliomas

PeerJ (San Francisco, CA), 2023-03, Vol.11, p.e15096-e15096, Article e15096

2023

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Spatially resolved single-cell translatomics at molecular resolution

Science (American Association for the Advancement of Science), 2023-06, Vol.380 (6652), p.eadd3067-eadd3067

2023

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Immune profile and mitotic index of metastatic melanoma lesions enhance clinical staging in predicting patient survival

Proceedings of the National Academy of Sciences - PNAS, 2009-12, Vol.106 (48), p.20429-20434

2009

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A statistical framework for differential pseudotime analysis with multiple single-cell RNA-seq samples

Nature communications, 2023-11, Vol.14 (1), p.7286-7286, Article 7286

2023

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Gene-expression memory-based prediction of cell lineages from scRNA-seq datasets

Nature communications, 2024-03, Vol.15 (1), p.2744-2744, Article 2744

2024

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Anti-correlated feature selection prevents false discovery of subpopulations in scRNAseq

Nature communications, 2024-01, Vol.15 (1), p.699-699, Article 699

2024

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Recruited macrophages elicit atrial fibrillation

Science (American Association for the Advancement of Science), 2023-07, Vol.381 (6654), p.231-239

2023

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Pathway centric analysis for single-cell RNA-seq and spatial transcriptomics data with GSDensity

Nature communications, 2023-12, Vol.14 (1), p.8416-8416, Article 8416

2023

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Advanced sequencing-based high-throughput and long-read single-cell transcriptome analysis

Lab on a chip, 2024-05, Vol.24 (1), p.261-2621

2024

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Characterizing cancer metabolism from bulk and single-cell RNA-seq data using METAFlux

Nature communications, 2023-08, Vol.14 (1), p.4883-4883, Article 4883

2023

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Transcriptomic cytoarchitecture reveals principles of human neocortex organization

Science (American Association for the Advancement of Science), 2023-10, Vol.382 (6667), p.eadf6812-eadf6812

2023

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Phylogenetic inference from single-cell RNA-seq data

Scientific reports, 2023-08, Vol.13 (1), p.12854-12854, Article 12854

2023

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Cell-attribute aware community detection improves differential abundance testing from single-cell RNA-Seq data

Nature communications, 2023-06, Vol.14 (1), p.3244-3244, Article 3244

2023

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A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data

Nature communications, 2023-02, Vol.14 (1), p.1074-1074, Article 1074

2023

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Single-cell analysis delineates a trajectory toward the human early otic lineage

Proceedings of the National Academy of Sciences - PNAS, 2016-07, Vol.113 (30), p.8508-8513

2016

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scLENS: data-driven signal detection for unbiased scRNA-seq data analysis

Nature communications, 2024-04, Vol.15 (1), p.3575-3575, Article 3575

2024

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Exploring the resistance mechanism of triple-negative breast cancer to paclitaxel through the scRNA-seq analysis

PloS one, 2024-01, Vol.19 (1), p.e0297260-e0297260

2024

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scReadSim: a single-cell RNA-seq and ATAC-seq read simulator

Nature communications, 2023-11, Vol.14 (1), p.7482-7482, Article 7482

2023

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Correspondence analysis for dimension reduction, batch integration, and visualization of single-cell RNA-seq data

Scientific reports, 2023-01, Vol.13 (1), p.1197-1197, Article 1197

2023

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GRouNdGAN: GRN-guided simulation of single-cell RNA-seq data using causal generative adversarial networks

Nature communications, 2024-05, Vol.15 (1), p.4055-4055, Article 4055

2024

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scRNA-seq revealed high stemness epithelial malignant cell clusters and prognostic models of lung adenocarcinoma

Scientific reports, 2024-02, Vol.14 (1), p.3709-3709, Article 3709

2024

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A novel computational method enables RNA editome profiling during human hematopoiesis from scRNA-seq data

Scientific reports, 2023-06, Vol.13 (1), p.10335-10335, Article 10335

2023

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Single-cell RNA sequencing of murine hearts for studying the development of the cardiac conduction system

Scientific data, 2023-09, Vol.10 (1), p.577-577, Article 577

2023

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Effect of distance measures on confidences of t-SNE embeddings and its implications on clustering for scRNA-seq data

Scientific reports, 2023-04, Vol.13 (1), p.6567-6567, Article 6567

2023

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Identification of a hypoxia-related gene prognostic signature in colorectal cancer based on bulk and single-cell RNA-seq

Scientific reports, 2023-02, Vol.13 (1), p.2503-2503, Article 2503

2023

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An in silico approach to the identification of diagnostic and prognostic markers in low-grade gliomas

Spatially resolved single-cell translatomics at molecular resolution

Immune profile and mitotic index of metastatic melanoma lesions enhance clinical staging in predicting patient survival

A statistical framework for differential pseudotime analysis with multiple single-cell RNA-seq samples

Gene-expression memory-based prediction of cell lineages from scRNA-seq datasets

Anti-correlated feature selection prevents false discovery of subpopulations in scRNAseq

Recruited macrophages elicit atrial fibrillation

Pathway centric analysis for single-cell RNA-seq and spatial transcriptomics data with GSDensity

Advanced sequencing-based high-throughput and long-read single-cell transcriptome analysis

Characterizing cancer metabolism from bulk and single-cell RNA-seq data using METAFlux

Transcriptomic cytoarchitecture reveals principles of human neocortex organization

Phylogenetic inference from single-cell RNA-seq data

Cell-attribute aware community detection improves differential abundance testing from single-cell RNA-Seq data

A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data

Single-cell analysis delineates a trajectory toward the human early otic lineage

scLENS: data-driven signal detection for unbiased scRNA-seq data analysis

Exploring the resistance mechanism of triple-negative breast cancer to paclitaxel through the scRNA-seq analysis

scReadSim: a single-cell RNA-seq and ATAC-seq read simulator

Correspondence analysis for dimension reduction, batch integration, and visualization of single-cell RNA-seq data

GRouNdGAN: GRN-guided simulation of single-cell RNA-seq data using causal generative adversarial networks

scRNA-seq revealed high stemness epithelial malignant cell clusters and prognostic models of lung adenocarcinoma

A novel computational method enables RNA editome profiling during human hematopoiesis from scRNA-seq data

Single-cell RNA sequencing of murine hearts for studying the development of the cardiac conduction system

Effect of distance measures on confidences of t-SNE embeddings and its implications on clustering for scRNA-seq data

Identification of a hypoxia-related gene prognostic signature in colorectal cancer based on bulk and single-cell RNA-seq

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