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DNA Gene Expression Analysis on Diffuse Large B-Cell Lymphoma (DLBCL) Based on Filter Selection Method with Supervised Classification Method
Ist Teil von
Computational Intelligence in Data Mining, 2018, Vol.711, p.783-792
Ort / Verlag
Singapore: Springer Singapore Pte. Limited
Erscheinungsjahr
2018
Link zum Volltext
Quelle
Alma/SFX Local Collection
Beschreibungen/Notizen
The exponential growth of DNA dataset in the scientific repository has been encouraging interdisciplinary research on ecology, computer science, and bioinformatics. For better classification of cancer (DNA gene expression), many technologies are useful as demonstrated by a prior experimental study. The major challenging task of gene selection method is extracting informative genes contribution in the classification from the DNA microarray datasets at low computational cost. In this paper, amalgamation of Spearman’s correlation (SC) and filter-based feature selection (FS) methods is proposed. We demonstrate the extensive comparison of the effect of Spearman’s correlation with FS methods, i.e., Relief-F, Joint Mutual Information (JMI), and max-relevance and min-redundancy (MRMR). To measure the classification performance, four diverse supervised classifiers, i.e., K-nearest neighbor (K-NN), support vector machines (SVM), naïve Bayes (NB), and decision tree (DT), have been used on DLBCL dataset. The result demonstrates that Spearman’s correlation in conglomeration with MRMR performs better than other combinations.