Details

Autor(en) / Beteiligte

• Davis, James J
• Wattam, Alice R
• Aziz, Ramy K
• Brettin, Thomas
• Butler, Ralph
• Butler, Rory M
• Chlenski, Philippe
• Conrad, Neal
• Dickerman, Allan
• Dietrich, Emily M
• Gabbard, Joseph L
• Gerdes, Svetlana
• Guard, Andrew
• Kenyon, Ronald W
• Machi, Dustin
• Mao, Chunhong
• Murphy-Olson, Dan
• Nguyen, Marcus
• Nordberg, Eric K
• Olsen, Gary J
• Olson, Robert D
• Overbeek, Jamie C
• Overbeek, Ross
• Parrello, Bruce
• Pusch, Gordon D
• Shukla, Maulik
• Thomas, Chris
• VanOeffelen, Margo
• Vonstein, Veronika
• Warren, Andrew S
• Xia, Fangfang
• Xie, Dawen
• Yoo, Hyunseung
• Stevens, Rick

Titel

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

Ist Teil von

• Nucleic acids research, 2020-01, Vol.48 (D1), p.D606

Ort / Verlag

England

Erscheinungsjahr

2020

Quelle

MEDLINE

Beschreibungen/Notizen

• The PathoSystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious Diseases (https://www.patricbrc.org). PATRIC supports bioinformatic analyses of all bacteria with a special emphasis on pathogens, offering a rich comparative analysis environment that provides users with access to over 250 000 uniformly annotated and publicly available genomes with curated metadata. PATRIC offers web-based visualization and comparative analysis tools, a private workspace in which users can analyze their own data in the context of the public collections, services that streamline complex bioinformatic workflows and command-line tools for bulk data analysis. Over the past several years, as genomic and other omics-related experiments have become more cost-effective and widespread, we have observed considerable growth in the usage of and demand for easy-to-use, publicly available bioinformatic tools and services. Here we report the recent updates to the PATRIC resource, including new web-based comparative analysis tools, eight new services and the release of a command-line interface to access, query and analyze data.