Details

Autor(en) / Beteiligte

• Rustici, Gabriella
• Kolesnikov, Nikolay
• Brandizi, Marco
• Burdett, Tony
• Dylag, Miroslaw
• Emam, Ibrahim
• Farne, Anna
• Hastings, Emma
• Ison, Jon
• Keays, Maria
• Kurbatova, Natalja
• Malone, James
• Mani, Roby
• Mupo, Annalisa
• Pedro Pereira, Rui
• Pilicheva, Ekaterina
• Rung, Johan
• Sharma, Anjan
• Tang, Y Amy
• Ternent, Tobias
• Tikhonov, Andrew
• Welter, Danielle
• Williams, Eleanor
• Brazma, Alvis
• Parkinson, Helen
• Sarkans, Ugis

Titel

ArrayExpress update--trends in database growth and links to data analysis tools

Ist Teil von

• Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D987

Ort / Verlag

England

Erscheinungsjahr

2013

Link zum Volltext

Quelle

MEDLINE

Beschreibungen/Notizen

• The ArrayExpress Archive of Functional Genomics Data (http://www.ebi.ac.uk/arrayexpress) is one of three international functional genomics public data repositories, alongside the Gene Expression Omnibus at NCBI and the DDBJ Omics Archive, supporting peer-reviewed publications. It accepts data generated by sequencing or array-based technologies and currently contains data from almost a million assays, from over 30 000 experiments. The proportion of sequencing-based submissions has grown significantly over the last 2 years and has reached, in 2012, 15% of all new data. All data are available from ArrayExpress in MAGE-TAB format, which allows robust linking to data analysis and visualization tools, including Bioconductor and GenomeSpace. Additionally, R objects, for microarray data, and binary alignment format files, for sequencing data, have been generated for a significant proportion of ArrayExpress data.