Details

Autor(en) / Beteiligte

• Eswar, Narayanan
• John, Bino
• Mirkovic, Nebojsa
• Fiser, Andras
• Ilyin, Valentin A
• Pieper, Ursula
• Stuart, Ashley C
• Marti-Renom, Marc A
• Madhusudhan, M S
• Yerkovich, Bozidar
• Sali, Andrej

Titel

Tools for comparative protein structure modeling and analysis

Ist Teil von

• Nucleic acids research, 2003-07, Vol.31 (13), p.3375

Ort / Verlag

England

Erscheinungsjahr

2003

Link zum Volltext

Quelle

MEDLINE

Beschreibungen/Notizen

• The following resources for comparative protein structure modeling and analysis are described (http://salilab.org): MODELLER, a program for comparative modeling by satisfaction of spatial restraints; MODWEB, a web server for automated comparative modeling that relies on PSI-BLAST, IMPALA and MODELLER; MODLOOP, a web server for automated loop modeling that relies on MODELLER; MOULDER, a CPU intensive protocol of MODWEB for building comparative models based on distant known structures; MODBASE, a comprehensive database of annotated comparative models for all sequences detectably related to a known structure; MODVIEW, a Netscape plugin for Linux that integrates viewing of multiple sequences and structures; and SNPWEB, a web server for structure-based prediction of the functional impact of a single amino acid substitution.