Details

Autor(en) / Beteiligte

• Martı́-Renom, Marc A.
• Ilyin, Valentin A.
• Sali, Andrej

Titel

DBAli: a database of protein structure alignments

Ist Teil von

• Bioinformatics, 2001-08, Vol.17 (8), p.746-747

Ort / Verlag

Oxford: Oxford University Press

Erscheinungsjahr

2001

Quelle

Free E-Journal (出版社公開部分のみ）

Beschreibungen/Notizen

• The DBAli database includes approximately 35000 alignments of pairs of protein structures from SCOP (Lo Conte et al. , Nucleic Acids Res. , 28, 257–259, 2000) and CE (Shindyalov and Bourne, Protein Eng. , 11, 739–747, 1998). DBAli is linked to several resources, including Compare3D (Shindyalov and Bourne, http://www.sdsc.edu/pb/software.htm, 1999) and ModView (Ilyin and Sali, http://guitar.rockefeller.edu/ModView/, 2001) for visualizing sequence alignments and structure superpositions. A flexible search of DBAli by protein sequence and structure properties allows construction of subsets of alignments suitable for a number of applications, such as benchmarking of sequence–sequence and sequence–structure alignment methods under a variety of conditions. Availability: http://guitar.rockefeller.edu/DBAli/ Contact: sali@rockefeller.edu; http://guitar.rockefeller.edu * To whom correspondence should be addressed.