Details

Autor(en) / Beteiligte

• Li, Ruiqiang
• Li, Yingrui
• Kristiansen, Karsten
• Wang, Jun

Titel

SOAP: short oligonucleotide alignment program

Ist Teil von

• Bioinformatics, 2008-03, Vol.24 (5), p.713-714

Ort / Verlag

Oxford: Oxford University Press

Erscheinungsjahr

2008

Quelle

EZB-FREE-00999 freely available EZB journals

Beschreibungen/Notizen

• We have developed a program SOAP for efficient gapped and ungapped alignment of short oligonucleotides onto reference sequences. The program is designed to handle the huge amounts of short reads generated by parallel sequencing using the new generation Illumina-Solexa sequencing technology. SOAP is compatible with numerous applications, including single-read or pair-end resequencing, small RNA discovery and mRNA tag sequence mapping. SOAP is a command-driven program, which supports multi-threaded parallel computing, and has a batch module for multiple query sets. Availability: http://soap.genomics.org.cn Contact: soap@genomics.org.cn