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The PASTA server for protein aggregation prediction
Ist Teil von
Protein engineering, design and selection, 2007-10, Vol.20 (10), p.521-523
Ort / Verlag
England: Oxford University Press
Erscheinungsjahr
2007
Quelle
Oxford Journals 2020 Medicine
Beschreibungen/Notizen
Many different proteins aggregate into amyloid fibrils characterized by cross-β structure. β-strands contributed by distinct protein molecules are generally found in a parallel in-register alignment. Here, we describe the web server for a novel algorithm, prediction of amyloid structure aggregation (PASTA), to predict the most aggregation-prone portions and the corresponding β-strand inter-molecular pairing for a given input sequence. PASTA was previously shown to yield results in excellent agreement with available experimental observations, when tested on both natively unfolded and structured proteins. The web server and downloadable source code are freely accessible from the URL: http://protein.cribi.unipd.it/pasta/.