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Reduced hydroxymethylation characterizes medulloblastoma while TET and IDH genes are differentially expressed within molecular subgroups
Ist Teil von
Journal of neuro-oncology, 2018-08, Vol.139 (1), p.33-42
Ort / Verlag
New York: Springer US
Erscheinungsjahr
2018
Quelle
MEDLINE
Beschreibungen/Notizen
Introduction
Medulloblastoma (MB) is an embryonal tumour that originates from genetic deregulation of cerebellar developmental pathways and is classified into 4 molecular subgroups: SHH, WNT, group 3, and group 4. Hydroxymethylation levels progressively increases during cerebellum development suggesting a possibility of deregulation in MB pathogenesis. The aim of this study was to investigate global hydroxymethylation levels and changes in
TET
and
IDH
gene expression in MB samples compared to control cerebellum samples.
Methods
The methods utilized were qRT-PCR for gene expression, dot-blot and immunohistochemistry for global hydroxymethylation levels and sequencing for the investigation of
IDH
mutations.
Results
Our results show that global hydroxymethylation level was decreased in MB, and low 5hmC level was associated with the presence of metastasis.
TET1
expression levels were decreased in the WNT subgroup, while
TET3
expression levels were decreased in the SHH subgroup. Reduced
TET3
expression levels were associated with the presence of events such as relapse and death. Higher expression of
IDH1
was observed in MB group 3 samples, whereas no mutations were detected in exon 4 of
IDH1
and
IDH2
.
Conclusion
These findings suggest that reduction of global hydroxymethylation levels, an epigenetic event, may be important for MB development and/or maintenance, representing a possible target in this tumour and indicating a possible interaction of
TET
and
IDH
genes with the developmental pathways specifically activated in the MB subgroups. These genes could be specific targets and markers for each subgroup.