Nature genetics, 2018-12, Vol.50 (12), p.1688-1695
- Vesth, Tammi C
- Nybo, Jane L
- Theobald, Sebastian
- Frisvad, Jens C
- Larsen, Thomas O
- Nielsen, Kristian F
- Hoof, Jakob B
- Brandl, Julian
- Salamov, Asaf
- Riley, Robert
- Gladden, John M
- Phatale, Pallavi
- Nielsen, Morten T
- Lyhne, Ellen K
- Kogle, Martin E
- Strasser, Kimchi
- McDonnell, Erin
- Barry, Kerrie
- Clum, Alicia
- Chen, Cindy
- LaButti, Kurt
- Haridas, Sajeet
- Nolan, Matt
- Sandor, Laura
- Kuo, Alan
- Lipzen, Anna
- Hainaut, Matthieu
- Drula, Elodie
- Tsang, Adrian
- Magnuson, Jon K
- Henrissat, Bernard
- Wiebenga, Ad
- Simmons, Blake A
- Mäkelä, Miia R
- de Vries, Ronald P
- Grigoriev, Igor V
- Mortensen, Uffe H
- Baker, Scott E
- Andersen, Mikael R
2018
Details
- Autor(en) / Beteiligte
- Vesth, Tammi C
- Nybo, Jane L
- Theobald, Sebastian
- Frisvad, Jens C
- Larsen, Thomas O
- Nielsen, Kristian F
- Hoof, Jakob B
- Brandl, Julian
- Salamov, Asaf
- Riley, Robert
- Gladden, John M
- Phatale, Pallavi
- Nielsen, Morten T
- Lyhne, Ellen K
- Kogle, Martin E
- Strasser, Kimchi
- McDonnell, Erin
- Barry, Kerrie
- Clum, Alicia
- Chen, Cindy
- LaButti, Kurt
- Haridas, Sajeet
- Nolan, Matt
- Sandor, Laura
- Kuo, Alan
- Lipzen, Anna
- Hainaut, Matthieu
- Drula, Elodie
- Tsang, Adrian
- Magnuson, Jon K
- Henrissat, Bernard
- Wiebenga, Ad
- Simmons, Blake A
- Mäkelä, Miia R
- de Vries, Ronald P
- Grigoriev, Igor V
- Mortensen, Uffe H
- Baker, Scott E
- Andersen, Mikael R
- Titel
- Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri
- Ist Teil von
- Nature genetics, 2018-12, Vol.50 (12), p.1688-1695
- Ort / Verlag
- United States: Nature Publishing Group
- Erscheinungsjahr
- 2018
- Link zum Volltext
- Quelle
- MEDLINE
- Beschreibungen/Notizen
- Aspergillus section Nigri comprises filamentous fungi relevant to biomedicine, bioenergy, health, and biotechnology. To learn more about what genetically sets these species apart, as well as about potential applications in biotechnology and biomedicine, we sequenced 23 genomes de novo, forming a full genome compendium for the section (26 species), as well as 6 Aspergillus niger isolates. This allowed us to quantify both inter- and intraspecies genomic variation. We further predicted 17,903 carbohydrate-active enzymes and 2,717 secondary metabolite gene clusters, which we condensed into 455 distinct families corresponding to compound classes, 49% of which are only found in single species. We performed metabolomics and genetic engineering to correlate genotypes to phenotypes, as demonstrated for the metabolite aurasperone, and by heterologous transfer of citrate production to Aspergillus nidulans. Experimental and computational analyses showed that both secondary metabolism and regulation are key factors that are significant in the delineation of Aspergillus species.
- Sprache
- Englisch
- Identifikatoren
- ISSN: 1061-4036eISSN: 1546-1718DOI: 10.1038/s41588-018-0246-1Titel-ID: cdi_osti_scitechconnect_1492689
- Format
- –
- Schlagworte
- Algorithms, Analysis, Aspergillus, Aspergillus - classification, Aspergillus - genetics, Aspergillus - metabolism, Aspergillus nidulans, Aspergillus niger, Base Sequence, Bioinformatics, Biotechnology, Carbohydrate Metabolism - genetics, Carbohydrates, Citric acid, Computer applications, Control, DNA sequencing, Enzymes, Fungi, Gene clusters, Gene sequencing, Genes, Genetic diversity, Genetic engineering, Genetic Speciation, Genetic Variation, Genome, Fungal - genetics, Genomes, Genomics, Genomics, fungi, Aspergillus, Nigri, Primary Metabolism, Secondary Metabolism, CAZyme, Genotypes, Identification and classification, Laboratories, Life Sciences, Metabolism, Metabolites, Metabolomics, Methods, Multigene Family, Nucleotide sequencing, Phenotypes, Phylogenetics, Phylogeny, Proteins, Quantitative Methods, Renewable energy, Software, Species, Species Specificity, Whole Genome Sequencing