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The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens

Science (American Association for the Advancement of Science), 2012-08, Vol.337 (6098), p.1107-1111

2012

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Prediction of antibiotic resistance: time for a new preclinical paradigm?

Nature reviews. Microbiology, 2017-11, Vol.15 (11), p.689-696

2017

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Forecasting the dissemination of antibiotic resistance genes across bacterial genomes

Nature communications, 2021-04, Vol.12 (1), p.2435-2435, Article 2435

2021

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Bacteria Subsisting on Antibiotics

Science (American Association for the Advancement of Science), 2008-04, Vol.320 (5872), p.100-103

2008

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Overcoming genetic heterogeneity in industrial fermentations

Nature biotechnology, 2019-08, Vol.37 (8), p.869-876

2019

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Survival and Evolution of a Large Multidrug Resistance Plasmid in New Clinical Bacterial Hosts

Molecular biology and evolution, 2016-11, Vol.33 (11), p.2860-2873

2016

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Use of collateral sensitivity networks to design drug cycling protocols that avoid resistance development

Science translational medicine, 2013-09, Vol.5 (204), p.204ra132

2013

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Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora

Science (American Association for the Advancement of Science), 2009-08, Vol.325 (5944), p.1128-1131

2009

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Evolutionary dynamics of bacteria in a human host environment

Proceedings of the National Academy of Sciences - PNAS, 2011-05, Vol.108 (18), p.7481-7486

2011

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Dissemination of antibiotic resistance genes from antibiotic producers to pathogens

Nature communications, 2017-06, Vol.8 (1), p.15784-15784, Article 15784

2017

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Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria

Nature communications, 2014-08, Vol.5 (1), p.4714-4714, Article 4714

2014

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CRMAGE: CRISPR Optimized MAGE Recombineering

Scientific reports, 2016-01, Vol.6 (1), p.19452, Article 19452

2016

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Collateral sensitivity constrains resistance evolution of the CTX-M-15 β-lactamase

Nature communications, 2019-02, Vol.10 (1), p.618-10, Article 618

2019

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Microbial foods for improving human and planetary health

Cell, 2023-02, Vol.186 (3), p.469-478

2023

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A versatile one-step CRISPR-Cas9 based approach to plasmid-curing

Microbial cell factories, 2017-08, Vol.16 (1), p.135-135, Article 135

2017

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Antibiotics and the resistant microbiome

Current opinion in microbiology, 2011-10, Vol.14 (5), p.556-563

2011

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Distinct composition and metabolic functions of human gut microbiota are associated with cachexia in lung cancer patients

The ISME Journal, 2021-11, Vol.15 (11), p.3207-3220

2021

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Niclosamide shows strong antiviral activity in a human airway model of SARS-CoV-2 infection and a conserved potency against the Alpha (B.1.1.7), Beta (B.1.351) and Delta variant (B.1.617.2)

PloS one, 2021-12, Vol.16 (12), p.e0260958

2021

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Limited dissemination of the wastewater treatment plant core resistome

Nature communications, 2015-09, Vol.6 (1), p.8452-8452, Article 8452

2015

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Predictable tuning of protein expression in bacteria

Nature methods, 2016-03, Vol.13 (3), p.233-236

2016

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Predictable modulation of cancer treatment outcomes by the gut microbiota

Microbiome, 2020-03, Vol.8 (1), p.28-28, Article 28

2020

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Context matters — the complex interplay between resistome genotypes and resistance phenotypes

Current opinion in microbiology, 2012-10, Vol.15 (5), p.577-582

2012

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Collateral Resistance and Sensitivity Modulate Evolution of High-Level Resistance to Drug Combination Treatment in Staphylococcus aureus

Molecular biology and evolution, 2015-05, Vol.32 (5), p.1175-1185

2015

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Dominant resistance and negative epistasis can limit the co-selection of de novo resistance mutations and antibiotic resistance genes

Nature communications, 2020-03, Vol.11 (1), p.1199-9, Article 1199

2020

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High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917

BMC bioinformatics, 2022-12, Vol.23 (1), p.566-566, Article 566

2022

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The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens

Prediction of antibiotic resistance: time for a new preclinical paradigm?

Forecasting the dissemination of antibiotic resistance genes across bacterial genomes

Bacteria Subsisting on Antibiotics

Overcoming genetic heterogeneity in industrial fermentations

Survival and Evolution of a Large Multidrug Resistance Plasmid in New Clinical Bacterial Hosts

Use of collateral sensitivity networks to design drug cycling protocols that avoid resistance development

Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora

Evolutionary dynamics of bacteria in a human host environment

Dissemination of antibiotic resistance genes from antibiotic producers to pathogens

Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria

CRMAGE: CRISPR Optimized MAGE Recombineering

Collateral sensitivity constrains resistance evolution of the CTX-M-15 β-lactamase

Microbial foods for improving human and planetary health

A versatile one-step CRISPR-Cas9 based approach to plasmid-curing

Antibiotics and the resistant microbiome

Distinct composition and metabolic functions of human gut microbiota are associated with cachexia in lung cancer patients

Niclosamide shows strong antiviral activity in a human airway model of SARS-CoV-2 infection and a conserved potency against the Alpha (B.1.1.7), Beta (B.1.351) and Delta variant (B.1.617.2)

Limited dissemination of the wastewater treatment plant core resistome

Predictable tuning of protein expression in bacteria

Predictable modulation of cancer treatment outcomes by the gut microbiota

Context matters — the complex interplay between resistome genotypes and resistance phenotypes

Collateral Resistance and Sensitivity Modulate Evolution of High-Level Resistance to Drug Combination Treatment in Staphylococcus aureus

Dominant resistance and negative epistasis can limit the co-selection of de novo resistance mutations and antibiotic resistance genes

High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917

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