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Expansions of microsatellite repeats are responsible for numerous hereditary diseases in humans, including myotonic dystrophy and Friedreich’s ataxia. Whereas the length of an expandable repeat is the main factor determining disease inheritance, recent data point to genomic trans modifiers that can impact the likelihood of expansions and disease progression. Detection of these modifiers may lead to understanding and treating repeat expansion diseases. Here, we describe a method for the rapid, genome-wide identification of trans modifiers for repeat expansion in a yeast experimental system. Using this method, we found that missense mutations in the endoribonuclease subunit (Ysh1) of the mRNA cleavage and polyadenylation complex dramatically increase the rate of (GAA)n repeat expansions but only when they are actively transcribed. These expansions correlate with slower transcription elongation caused by the ysh1 mutation. These results reveal an interplay between RNA processing and repeat-mediated genome instability, confirming the validity of our approach.
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•Genetic screen: UV mutagenesis → select for repeat expansions → genome sequencing•Point mutants in essential gene YSH1 increase the rate of GAA repeat expansions•YSH1 mutation → slow transcription elongation → DSB → repeat expansions
McGinty et al. developed a genetic screen in S. cerevisiae to identify genes promoting expansions of (GAA)n repeats. The authors uncovered the unexpected involvement of essential RNA-processing gene, YSH1. Mutation in YSH1 leads to slow transcription elongation, promoting DSBs, whose repair via HR causes repeat expansions.