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Based on the experimentally determined pairwise site locations of transition metal atoms in doped semiconducting boron carbides, model spin-polarized electronic structure calculations indicate that some transition metal doped semiconducting boron carbides may act as excellent spin filters when used as the dielectric barrier in a magnetic tunnel junction structure. The local spin configuration of all the 3d transition metals, Ti to Cu, doped boron carbides are compared using first-principle total energy calculations on cluster and infinite icosahedral chain models. In the case of Ti and Fe doping, there may be considerable enhancements in the magneto-resistance of the heterostructure. The models also confirm that the favorable sites 3d transition metal atoms occupied are within the icosahedral cage, in a pairwise fashion on adjacent icosahedra.